Download the offline executable and run in command-line console. Java Runtime Environment is required, and for more instruction, please see the user's manual.

Download »

Sample Data

Download the sample data of Rice (Oryza Sativa) and Sorghum (Sorghumb Bicolor), including the synteny and collinearity file, the GFF annotation, with 4 types of control file. Then follow the instruction in the manual to run the tests.

Download »

User Manual

This document introduced the usage of the software package, including the offline command-line instructions, parameter configuration, and test for sample data.

Download »

How to cite:

Yiqing Xu, Changwei Bi, Guoxin Wu, Suyun Wei, Xiaogang Dai, Tongming Yin, and Ning Ye, VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity, BioMed Research International, Volume 2016 (2016), doi: 10.1155/2016/7823429
Full access

Development Team

Team Leader: Yiqing Xu
Team Member: Siyuan Du, Qi'ang Wang, Hui Chen, Qi Chen, Yilu Xue, Changwei Bi